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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.0.dev0

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        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-06-04, 07:06 based on data in: /home/asommer3/Research/Seqcoast_4939/results/raw_fastqc_results


        General Statistics

        Showing 384/384 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        AS0200_4939_129_S6_R1_001
        49.2%
        33%
        1.2
        AS0200_4939_129_S6_R2_001
        49.7%
        33%
        1.2
        AS0244_4939_1_S15_R1_001
        31.7%
        50%
        1.0
        AS0244_4939_1_S15_R2_001
        30.3%
        50%
        1.0
        AS0264_4939_2_S27_R1_001
        29.9%
        50%
        1.0
        AS0264_4939_2_S27_R2_001
        27.7%
        50%
        1.0
        AS0290_4939_134_S66_R1_001
        45.4%
        32%
        1.2
        AS0290_4939_134_S66_R2_001
        44.8%
        32%
        1.2
        AS0291_4939_135_S78_R1_001
        45.1%
        32%
        1.3
        AS0291_4939_135_S78_R2_001
        45.9%
        32%
        1.3
        AS0292_4939_48_S104_R1_001
        52.2%
        32%
        1.4
        AS0292_4939_48_S104_R2_001
        49.9%
        32%
        1.4
        AS0295_4939_49_S21_R1_001
        55.7%
        32%
        1.8
        AS0295_4939_49_S21_R2_001
        52.8%
        32%
        1.8
        AS0296_4939_50_S33_R1_001
        51.2%
        32%
        1.4
        AS0296_4939_50_S33_R2_001
        49.0%
        32%
        1.4
        AS0297_4939_136_S90_R1_001
        46.2%
        32%
        1.6
        AS0297_4939_136_S90_R2_001
        45.5%
        33%
        1.6
        AS0299_4939_51_S45_R1_001
        49.3%
        32%
        1.3
        AS0299_4939_51_S45_R2_001
        47.3%
        32%
        1.3
        AS0304_4939_138_S19_R1_001
        49.1%
        32%
        1.5
        AS0304_4939_138_S19_R2_001
        49.8%
        33%
        1.5
        AS0305_4939_52_S57_R1_001
        46.1%
        32%
        1.1
        AS0305_4939_52_S57_R2_001
        43.9%
        32%
        1.1
        AS0307_4939_139_S31_R1_001
        45.1%
        33%
        1.3
        AS0307_4939_139_S31_R2_001
        45.6%
        33%
        1.3
        AS0336_4939_3_S39_R1_001
        38.7%
        50%
        1.8
        AS0336_4939_3_S39_R2_001
        36.8%
        50%
        1.8
        AS0344_4939_4_S51_R1_001
        29.0%
        50%
        0.9
        AS0344_4939_4_S51_R2_001
        27.4%
        50%
        0.9
        AS0392_4939_5_S63_R1_001
        31.8%
        50%
        1.2
        AS0392_4939_5_S63_R2_001
        29.7%
        50%
        1.2
        AS0398_4939_6_S75_R1_001
        31.1%
        50%
        1.0
        AS0398_4939_6_S75_R2_001
        29.4%
        50%
        1.0
        AS0419_4939_32_S102_R1_001
        34.7%
        54%
        1.6
        AS0419_4939_32_S102_R2_001
        32.8%
        54%
        1.6
        AS0449_4939_186_S25_R1_001
        34.3%
        50%
        1.2
        AS0449_4939_186_S25_R2_001
        34.5%
        50%
        1.2
        AS0450_4939_187_S37_R1_001
        35.6%
        50%
        1.3
        AS0450_4939_187_S37_R2_001
        35.8%
        50%
        1.3
        AS0451_4939_132_S42_R1_001
        36.1%
        50%
        1.2
        AS0451_4939_132_S42_R2_001
        36.6%
        50%
        1.2
        AS0458_4939_188_S49_R1_001
        33.0%
        50%
        1.2
        AS0458_4939_188_S49_R2_001
        32.8%
        50%
        1.2
        AS0477_4939_7_S87_R1_001
        32.6%
        50%
        1.2
        AS0477_4939_7_S87_R2_001
        30.9%
        50%
        1.2
        AS0484_4939_189_S61_R1_001
        33.8%
        50%
        1.2
        AS0484_4939_189_S61_R2_001
        33.8%
        50%
        1.2
        AS0502_4939_137_S7_R1_001
        34.3%
        50%
        1.3
        AS0502_4939_137_S7_R2_001
        34.4%
        50%
        1.3
        AS0504_4939_190_S73_R1_001
        38.1%
        50%
        1.6
        AS0504_4939_190_S73_R2_001
        38.0%
        50%
        1.6
        AS0514_4939_30_S78_R1_001
        33.3%
        50%
        1.2
        AS0514_4939_30_S78_R2_001
        31.8%
        50%
        1.2
        AS0515_4939_191_S85_R1_001
        36.0%
        50%
        1.3
        AS0515_4939_191_S85_R2_001
        35.7%
        50%
        1.3
        AS0516_4939_192_S97_R1_001
        35.1%
        51%
        1.2
        AS0516_4939_192_S97_R2_001
        35.4%
        51%
        1.2
        AS0539_4939_123_S29_R1_001
        34.9%
        50%
        1.4
        AS0539_4939_123_S29_R2_001
        35.3%
        50%
        1.4
        AS0540_4939_184_S96_R1_001
        34.9%
        50%
        1.3
        AS0540_4939_184_S96_R2_001
        33.3%
        50%
        1.3
        AS0543_4939_31_S90_R1_001
        32.9%
        50%
        1.2
        AS0543_4939_31_S90_R2_001
        30.9%
        50%
        1.2
        AS0544_4939_185_S13_R1_001
        41.3%
        50%
        2.0
        AS0544_4939_185_S13_R2_001
        42.1%
        50%
        2.0
        AS0549_4939_181_S60_R1_001
        45.8%
        32%
        1.1
        AS0549_4939_181_S60_R2_001
        46.3%
        32%
        1.1
        AS0553_4939_183_S84_R1_001
        50.7%
        32%
        1.2
        AS0553_4939_183_S84_R2_001
        51.9%
        32%
        1.2
        AS0560_4939_168_S94_R1_001
        32.9%
        56%
        1.3
        AS0560_4939_168_S94_R2_001
        32.5%
        56%
        1.3
        AS0565_4939_179_S36_R1_001
        54.3%
        31%
        1.1
        AS0565_4939_179_S36_R2_001
        55.9%
        32%
        1.1
        AS0598_4939_33_S19_R1_001
        28.9%
        57%
        0.9
        AS0598_4939_33_S19_R2_001
        27.3%
        57%
        0.9
        AS0602_4939_140_S43_R1_001
        45.9%
        32%
        1.2
        AS0602_4939_140_S43_R2_001
        46.5%
        32%
        1.2
        AS0623_4939_141_S55_R1_001
        46.5%
        32%
        1.2
        AS0623_4939_141_S55_R2_001
        47.3%
        32%
        1.2
        AS0625_4939_53_S69_R1_001
        49.2%
        31%
        1.1
        AS0625_4939_53_S69_R2_001
        46.7%
        31%
        1.1
        AS0641_4939_54_S81_R1_001
        44.7%
        32%
        1.2
        AS0641_4939_54_S81_R2_001
        42.5%
        32%
        1.2
        AS0650_4939_55_S93_R1_001
        43.9%
        32%
        0.9
        AS0650_4939_55_S93_R2_001
        41.9%
        32%
        0.9
        AS0655_4939_56_S105_R1_001
        51.2%
        32%
        1.5
        AS0655_4939_56_S105_R2_001
        49.1%
        32%
        1.5
        AS0679_4939_142_S67_R1_001
        48.4%
        32%
        1.5
        AS0679_4939_142_S67_R2_001
        48.8%
        32%
        1.5
        AS0687_4939_143_S79_R1_001
        43.3%
        33%
        1.3
        AS0687_4939_143_S79_R2_001
        43.3%
        33%
        1.3
        AS0700_4939_57_S22_R1_001
        47.8%
        32%
        1.0
        AS0700_4939_57_S22_R2_001
        45.8%
        32%
        1.0
        AS0701_4939_8_S99_R1_001
        28.4%
        50%
        1.0
        AS0701_4939_8_S99_R2_001
        27.4%
        50%
        1.0
        AS0715_4939_144_S91_R1_001
        47.2%
        33%
        1.5
        AS0715_4939_144_S91_R2_001
        48.0%
        33%
        1.5
        AS0739_4939_130_S18_R1_001
        50.8%
        33%
        1.4
        AS0739_4939_130_S18_R2_001
        51.3%
        34%
        1.4
        AS0750_4939_166_S70_R1_001
        44.8%
        32%
        1.1
        AS0750_4939_166_S70_R2_001
        44.9%
        32%
        1.1
        AS0811_4939_145_S8_R1_001
        42.4%
        32%
        1.3
        AS0811_4939_145_S8_R2_001
        42.5%
        33%
        1.3
        AS0826_4939_146_S20_R1_001
        44.3%
        34%
        1.2
        AS0826_4939_146_S20_R2_001
        44.5%
        34%
        1.2
        AS0841_4939_147_S32_R1_001
        41.1%
        33%
        1.1
        AS0841_4939_147_S32_R2_001
        41.2%
        33%
        1.1
        AS0843_4939_167_S82_R1_001
        44.0%
        33%
        1.3
        AS0843_4939_167_S82_R2_001
        44.3%
        33%
        1.3
        AS0860_4939_58_S1_R1_001
        40.0%
        32%
        1.1
        AS0860_4939_58_S1_R2_001
        40.8%
        32%
        1.1
        AS0867_4939_9_S16_R1_001
        29.1%
        50%
        0.9
        AS0867_4939_9_S16_R2_001
        27.4%
        50%
        0.9
        AS0868_4939_10_S28_R1_001
        36.3%
        50%
        1.4
        AS0868_4939_10_S28_R2_001
        34.5%
        50%
        1.4
        AS0882_4939_131_S30_R1_001
        49.9%
        33%
        1.5
        AS0882_4939_131_S30_R2_001
        50.3%
        33%
        1.5
        AS0883_4939_59_S46_R1_001
        45.7%
        32%
        1.0
        AS0883_4939_59_S46_R2_001
        43.1%
        32%
        1.0
        AS0885_4939_148_S44_R1_001
        50.0%
        32%
        1.5
        AS0885_4939_148_S44_R2_001
        50.5%
        32%
        1.5
        AS0886_4939_34_S31_R1_001
        36.9%
        56%
        1.3
        AS0886_4939_34_S31_R2_001
        34.4%
        56%
        1.3
        AS0890_4939_11_S40_R1_001
        37.5%
        50%
        1.5
        AS0890_4939_11_S40_R2_001
        35.7%
        50%
        1.5
        AS0895_4939_35_S43_R1_001
        31.3%
        57%
        1.2
        AS0895_4939_35_S43_R2_001
        29.6%
        57%
        1.2
        AS0898_4939_149_S56_R1_001
        42.7%
        33%
        1.2
        AS0898_4939_149_S56_R2_001
        42.4%
        33%
        1.2
        AS0900_4939_60_S58_R1_001
        39.1%
        32%
        1.0
        AS0900_4939_60_S58_R2_001
        37.6%
        32%
        1.0
        AS0907_4939_150_S68_R1_001
        46.5%
        33%
        1.4
        AS0907_4939_150_S68_R2_001
        47.0%
        33%
        1.4
        AS0909_4939_12_S52_R1_001
        31.4%
        50%
        1.1
        AS0909_4939_12_S52_R2_001
        29.3%
        50%
        1.1
        AS0913_4939_61_S70_R1_001
        46.3%
        32%
        1.0
        AS0913_4939_61_S70_R2_001
        44.3%
        32%
        1.0
        AS0915_4939_133_S54_R1_001
        46.0%
        33%
        1.5
        AS0915_4939_133_S54_R2_001
        46.4%
        33%
        1.5
        AS0918_4939_151_S80_R1_001
        40.2%
        33%
        1.0
        AS0918_4939_151_S80_R2_001
        40.9%
        33%
        1.0
        AS0957_4939_13_S64_R1_001
        33.1%
        50%
        1.2
        AS0957_4939_13_S64_R2_001
        30.8%
        50%
        1.2
        AS1018_ 4939_152_S92_R1_001
        42.1%
        32%
        1.1
        AS1018_4939_152_S92_R2_001
        42.4%
        32%
        1.1
        AS1031_4939_153_S9_R1_001
        41.7%
        33%
        1.1
        AS1031_4939_153_S9_R2_001
        42.2%
        33%
        1.1
        AS1038_4939_62_S82_R1_001
        54.2%
        31%
        1.4
        AS1038_4939_62_S82_R2_001
        52.2%
        31%
        1.4
        AS1041_4939_36_S55_R1_001
        30.7%
        57%
        1.1
        AS1041_4939_36_S55_R2_001
        29.8%
        57%
        1.1
        AS1060_4939_14_S76_R1_001
        31.0%
        50%
        1.1
        AS1060_4939_14_S76_R2_001
        29.4%
        50%
        1.1
        AS1072_4939_154_S21_R1_001
        47.5%
        33%
        1.3
        AS1072_4939_154_S21_R2_001
        48.0%
        33%
        1.3
        AS1096_4939_155_S33_R1_001
        43.5%
        33%
        1.3
        AS1096_4939_155_S33_R2_001
        44.1%
        33%
        1.3
        AS1149_4939_15_S88_R1_001
        38.9%
        50%
        2.0
        AS1149_4939_15_S88_R2_001
        36.2%
        50%
        2.0
        AS1184_4939_16_S100_R1_001
        34.3%
        50%
        1.3
        AS1184_4939_16_S100_R2_001
        32.3%
        50%
        1.3
        AS1185_4939_17_S17_R1_001
        28.6%
        50%
        0.9
        AS1185_4939_17_S17_R2_001
        26.8%
        50%
        0.9
        AS1188_4939_37_S67_R1_001
        35.4%
        57%
        1.6
        AS1188_4939_37_S67_R2_001
        33.7%
        57%
        1.6
        AS1189_4939_18_S29_R1_001
        30.7%
        50%
        1.1
        AS1189_4939_18_S29_R2_001
        29.0%
        50%
        1.1
        AS1190_4939_19_S41_R1_001
        33.3%
        50%
        1.3
        AS1190_4939_19_S41_R2_001
        31.5%
        50%
        1.3
        AS1191_4939_20_S53_R1_001
        34.6%
        50%
        1.3
        AS1191_4939_20_S53_R2_001
        32.3%
        50%
        1.3
        AS1192_4939_21_S65_R1_001
        34.4%
        50%
        1.3
        AS1192_4939_21_S65_R2_001
        32.5%
        50%
        1.3
        AS1193_4939_22_S77_R1_001
        34.4%
        50%
        1.3
        AS1193_4939_22_S77_R2_001
        32.4%
        50%
        1.3
        AS1194_4939_23_S89_R1_001
        34.9%
        49%
        1.5
        AS1194_4939_23_S89_R2_001
        32.8%
        49%
        1.5
        AS1195_4939_24_S101_R1_001
        32.0%
        51%
        1.3
        AS1195_4939_24_S101_R2_001
        30.2%
        51%
        1.3
        AS1196_4939_25_S18_R1_001
        34.1%
        50%
        1.2
        AS1196_4939_25_S18_R2_001
        32.2%
        50%
        1.2
        AS1198_4939_26_S30_R1_001
        31.2%
        50%
        1.0
        AS1198_4939_26_S30_R2_001
        29.4%
        50%
        1.0
        AS1199_4939_27_S42_R1_001
        29.2%
        50%
        0.9
        AS1199_4939_27_S42_R2_001
        27.6%
        50%
        0.9
        AS1200_4939_28_S54_R1_001
        30.3%
        50%
        1.0
        AS1200_4939_28_S54_R2_001
        28.5%
        50%
        1.0
        AS1201_4939_29_S66_R1_001
        35.8%
        50%
        1.4
        AS1201_4939_29_S66_R2_001
        33.9%
        50%
        1.4
        AS1216_4939_38_S79_R1_001
        33.8%
        57%
        1.4
        AS1216_4939_38_S79_R2_001
        31.7%
        57%
        1.4
        AS1218_4939_39_S91_R1_001
        31.8%
        57%
        1.2
        AS1218_4939_39_S91_R2_001
        29.3%
        57%
        1.2
        AS1219_4939_40_S103_R1_001
        32.4%
        57%
        1.3
        AS1219_4939_40_S103_R2_001
        30.3%
        57%
        1.3
        AS1221_4939_41_S20_R1_001
        35.3%
        56%
        1.1
        AS1221_4939_41_S20_R2_001
        32.9%
        56%
        1.1
        AS1222_4939_42_S32_R1_001
        27.2%
        57%
        0.9
        AS1222_4939_42_S32_R2_001
        25.7%
        57%
        0.9
        AS1224_4939_43_S44_R1_001
        34.7%
        56%
        1.1
        AS1224_4939_43_S44_R2_001
        32.8%
        56%
        1.1
        AS1225_4939_44_S56_R1_001
        33.7%
        57%
        1.4
        AS1225_4939_44_S56_R2_001
        31.5%
        57%
        1.4
        AS1226_4939_45_S68_R1_001
        32.1%
        57%
        1.2
        AS1226_4939_45_S68_R2_001
        29.8%
        57%
        1.2
        AS1227_4939_46_S80_R1_001
        35.6%
        56%
        1.4
        AS1227_4939_46_S80_R2_001
        34.1%
        56%
        1.4
        AS1245_4939_47_S92_R1_001
        33.6%
        56%
        1.3
        AS1245_4939_47_S92_R2_001
        31.3%
        56%
        1.3
        AS1258_4939_156_S45_R1_001
        44.0%
        32%
        1.3
        AS1258_4939_156_S45_R2_001
        44.2%
        32%
        1.3
        AS1261_4939_157_S57_R1_001
        46.9%
        33%
        1.4
        AS1261_4939_157_S57_R2_001
        47.1%
        33%
        1.4
        AS1263_4939_158_S69_R1_001
        41.4%
        33%
        1.1
        AS1263_4939_158_S69_R2_001
        41.9%
        33%
        1.1
        AS1264_4939_159_S81_R1_001
        43.5%
        33%
        1.3
        AS1264_4939_159_S81_R2_001
        43.3%
        33%
        1.3
        AS1265_4939_63_S94_R1_001
        41.7%
        32%
        1.2
        AS1265_4939_63_S94_R2_001
        39.5%
        32%
        1.2
        AS1266_4939_64_S106_R1_001
        43.8%
        33%
        1.3
        AS1266_4939_64_S106_R2_001
        40.5%
        33%
        1.3
        AS1267_4939_65_S23_R1_001
        35.2%
        33%
        0.7
        AS1267_4939_65_S23_R2_001
        33.7%
        33%
        0.7
        AS1268_4939_66_S35_R1_001
        53.0%
        32%
        2.0
        AS1268_4939_66_S35_R2_001
        50.3%
        32%
        2.0
        AS1269_4939_67_S47_R1_001
        49.3%
        32%
        1.3
        AS1269_4939_67_S47_R2_001
        46.7%
        32%
        1.3
        AS1270_4939_68_S59_R1_001
        40.8%
        33%
        1.1
        AS1270_4939_68_S59_R2_001
        38.3%
        33%
        1.1
        AS1271_4939_69_S71_R1_001
        40.0%
        33%
        1.1
        AS1271_4939_69_S71_R2_001
        37.2%
        33%
        1.1
        AS1272_4939_70_S83_R1_001
        43.3%
        33%
        1.1
        AS1272_4939_70_S83_R2_001
        41.0%
        33%
        1.1
        AS1274_4939_71_S95_R1_001
        50.0%
        31%
        0.9
        AS1274_4939_71_S95_R2_001
        47.8%
        31%
        0.9
        AS1276_4939_72_S107_R1_001
        38.7%
        32%
        1.0
        AS1276_4939_72_S107_R2_001
        35.0%
        32%
        1.0
        AS1278_4939_73_S24_R1_001
        39.7%
        33%
        0.9
        AS1278_4939_73_S24_R2_001
        37.7%
        33%
        0.9
        AS1281_4939_74_S36_R1_001
        42.5%
        33%
        1.2
        AS1281_4939_74_S36_R2_001
        40.1%
        33%
        1.2
        AS1282_4939_160_S93_R1_001
        44.8%
        32%
        1.5
        AS1282_4939_160_S93_R2_001
        44.8%
        32%
        1.5
        AS1283_4939_75_S48_R1_001
        40.6%
        32%
        1.0
        AS1283_4939_75_S48_R2_001
        38.3%
        32%
        1.0
        AS1284_4939_76_S60_R1_001
        45.5%
        32%
        1.0
        AS1284_4939_76_S60_R2_001
        43.6%
        33%
        1.0
        AS1286_4939_77_S72_R1_001
        38.6%
        33%
        1.0
        AS1286_4939_77_S72_R2_001
        36.3%
        33%
        1.0
        AS1288_4939_78_S84_R1_001
        44.9%
        32%
        1.2
        AS1288_4939_78_S84_R2_001
        42.3%
        32%
        1.2
        AS1291_4939_79_S96_R1_001
        37.6%
        32%
        0.9
        AS1291_4939_79_S96_R2_001
        35.7%
        32%
        0.9
        AS1292_4939_80_S108_R1_001
        39.1%
        32%
        1.0
        AS1292_4939_80_S108_R2_001
        37.2%
        32%
        1.0
        AS1293_4939_81_S25_R1_001
        41.1%
        32%
        0.9
        AS1293_4939_81_S25_R2_001
        38.8%
        32%
        0.9
        AS1294_4939_82_S37_R1_001
        44.0%
        32%
        1.1
        AS1294_4939_82_S37_R2_001
        41.3%
        32%
        1.1
        AS1295_4939_83_S49_R1_001
        43.2%
        32%
        0.7
        AS1295_4939_83_S49_R2_001
        42.0%
        32%
        0.7
        AS1297_4939_84_S61_R1_001
        47.8%
        32%
        1.1
        AS1297_4939_84_S61_R2_001
        45.5%
        32%
        1.1
        AS1298_4939_85_S73_R1_001
        56.6%
        31%
        1.0
        AS1298_4939_85_S73_R2_001
        54.3%
        31%
        1.0
        AS1299_4939_86_S85_R1_001
        46.7%
        36%
        1.1
        AS1299_4939_86_S85_R2_001
        43.4%
        36%
        1.1
        AS1300_4939_87_S97_R1_001
        48.5%
        33%
        1.2
        AS1300_4939_87_S97_R2_001
        46.6%
        33%
        1.2
        AS1302_4939_161_S10_R1_001
        41.7%
        33%
        1.0
        AS1302_4939_161_S10_R2_001
        42.3%
        33%
        1.0
        AS1305_4939_88_S109_R1_001
        53.6%
        31%
        1.3
        AS1305_4939_88_S109_R2_001
        50.7%
        32%
        1.3
        AS1307_4939_89_S26_R1_001
        44.8%
        33%
        1.2
        AS1307_4939_89_S26_R2_001
        42.7%
        33%
        1.2
        AS1309_4939_90_S38_R1_001
        44.4%
        36%
        1.0
        AS1309_4939_90_S38_R2_001
        40.7%
        36%
        1.0
        AS1310_4939_91_S50_R1_001
        57.4%
        31%
        1.4
        AS1310_4939_91_S50_R2_001
        55.1%
        31%
        1.4
        AS1311_4939_92_S62_R1_001
        57.2%
        31%
        1.2
        AS1311_4939_92_S62_R2_001
        54.6%
        31%
        1.2
        AS1312_4939_93_S74_R1_001
        50.8%
        32%
        1.1
        AS1312_4939_93_S74_R2_001
        48.0%
        32%
        1.1
        AS1313_4939_94_S86_R1_001
        41.7%
        32%
        1.2
        AS1313_4939_94_S86_R2_001
        40.4%
        32%
        1.2
        AS1314_4939_95_S98_R1_001
        48.0%
        32%
        1.4
        AS1314_4939_95_S98_R2_001
        44.9%
        32%
        1.4
        AS1315_4939_96_S110_R1_001
        39.2%
        32%
        1.0
        AS1315_4939_96_S110_R2_001
        37.1%
        32%
        1.0
        AS1316_4939_97_S2_R1_001
        42.5%
        32%
        1.2
        AS1316_4939_97_S2_R2_001
        42.3%
        32%
        1.2
        AS1319_4939_162_S22_R1_001
        43.0%
        33%
        1.2
        AS1319_4939_162_S22_R2_001
        43.5%
        33%
        1.2
        AS1320_4939_163_S34_R1_001
        45.1%
        32%
        1.1
        AS1320_4939_163_S34_R2_001
        45.9%
        32%
        1.1
        AS1321_4939_98_S14_R1_001
        45.5%
        32%
        1.4
        AS1321_4939_98_S14_R2_001
        44.0%
        33%
        1.4
        AS1323_4939_99_S26_R1_001
        47.0%
        32%
        1.6
        AS1323_4939_99_S26_R2_001
        47.5%
        32%
        1.6
        AS1324_4939_100_S38_R1_001
        42.5%
        33%
        1.4
        AS1324_4939_100_S38_R2_001
        42.9%
        33%
        1.4
        AS1326_4939_101_S50_R1_001
        42.3%
        32%
        1.2
        AS1326_4939_101_S50_R2_001
        42.5%
        32%
        1.2
        AS1327_4939_102_S62_R1_001
        44.8%
        33%
        1.2
        AS1327_4939_102_S62_R2_001
        44.3%
        33%
        1.2
        AS1328_4939_103_S74_R1_001
        48.2%
        33%
        1.5
        AS1328_4939_103_S74_R2_001
        48.5%
        33%
        1.5
        AS1329_4939_104_S86_R1_001
        44.4%
        32%
        1.4
        AS1329_4939_104_S86_R2_001
        45.0%
        32%
        1.4
        AS1331_4939_105_S3_R1_001
        50.0%
        32%
        1.6
        AS1331_4939_105_S3_R2_001
        49.3%
        32%
        1.6
        AS1332_4939_106_S15_R1_001
        48.3%
        33%
        1.4
        AS1332_4939_106_S15_R2_001
        48.5%
        33%
        1.4
        AS1334_4939_107_S27_R1_001
        49.7%
        31%
        1.7
        AS1334_4939_107_S27_R2_001
        50.3%
        32%
        1.7
        AS1335_4939_108_S39_R1_001
        55.5%
        31%
        1.4
        AS1335_4939_108_S39_R2_001
        56.0%
        31%
        1.4
        AS1336_4939_109_S51_R1_001
        43.0%
        33%
        1.1
        AS1336_4939_109_S51_R2_001
        43.5%
        33%
        1.1
        AS1337_4939_110_S63_R1_001
        44.0%
        32%
        1.4
        AS1337_4939_110_S63_R2_001
        44.5%
        32%
        1.4
        AS1338_4939_111_S75_R1_001
        46.9%
        33%
        1.5
        AS1338_4939_111_S75_R2_001
        47.7%
        33%
        1.5
        AS1339_4939_112_S87_R1_001
        45.4%
        32%
        1.5
        AS1339_4939_112_S87_R2_001
        46.2%
        32%
        1.5
        AS1341_4939_113_S4_R1_001
        46.0%
        32%
        1.3
        AS1341_4939_113_S4_R2_001
        46.1%
        32%
        1.3
        AS1342_4939_114_S16_R1_001
        45.1%
        32%
        1.3
        AS1342_4939_114_S16_R2_001
        45.9%
        32%
        1.3
        AS1343_4939_115_S28_R1_001
        43.6%
        32%
        1.1
        AS1343_4939_115_S28_R2_001
        44.4%
        32%
        1.1
        AS1344_4939_116_S40_R1_001
        44.3%
        32%
        1.3
        AS1344_4939_116_S40_R2_001
        44.8%
        32%
        1.3
        AS1345_4939_117_S52_R1_001
        44.2%
        32%
        1.1
        AS1345_4939_117_S52_R2_001
        44.9%
        32%
        1.1
        AS1346_4939_118_S64_R1_001
        45.5%
        32%
        1.5
        AS1346_4939_118_S64_R2_001
        46.0%
        33%
        1.5
        AS1347_4939_119_S76_R1_001
        49.1%
        32%
        1.6
        AS1347_4939_119_S76_R2_001
        49.7%
        32%
        1.6
        AS1348_4939_120_S88_R1_001
        47.2%
        32%
        1.5
        AS1348_4939_120_S88_R2_001
        47.8%
        32%
        1.5
        AS1350_4939_164_S46_R1_001
        44.7%
        32%
        1.2
        AS1350_4939_164_S46_R2_001
        44.9%
        32%
        1.2
        AS1351_4939_121_S5_R1_001
        59.4%
        31%
        1.3
        AS1351_4939_121_S5_R2_001
        60.3%
        31%
        1.3
        AS1352_4939_122_S17_R1_001
        48.0%
        32%
        1.4
        AS1352_4939_122_S17_R2_001
        48.4%
        32%
        1.4
        AS1354_4939_165_S58_R1_001
        41.6%
        33%
        1.2
        AS1354_4939_165_S58_R2_001
        41.3%
        33%
        1.2
        AS1356_4939_124_S41_R1_001
        44.5%
        33%
        1.4
        AS1356_4939_124_S41_R2_001
        44.5%
        33%
        1.4
        AS1357_4939_125_S53_R1_001
        42.4%
        33%
        1.2
        AS1357_4939_125_S53_R2_001
        42.6%
        33%
        1.2
        AS1358_4939_126_S65_R1_001
        45.5%
        32%
        1.3
        AS1358_4939_126_S65_R2_001
        45.9%
        32%
        1.3
        AS1359_4939_127_S77_R1_001
        44.9%
        33%
        1.3
        AS1359_4939_127_S77_R2_001
        44.7%
        33%
        1.3
        AS1360_4939_128_S89_R1_001
        44.0%
        33%
        1.3
        AS1360_4939_128_S89_R2_001
        42.0%
        33%
        1.3
        AS1378_4939_169_S11_R1_001
        35.5%
        56%
        1.5
        AS1378_4939_169_S11_R2_001
        35.8%
        56%
        1.5
        AS1382_4939_170_S23_R1_001
        35.0%
        56%
        1.5
        AS1382_4939_170_S23_R2_001
        34.7%
        56%
        1.5
        AS1383_4939_171_S35_R1_001
        34.0%
        57%
        1.4
        AS1383_4939_171_S35_R2_001
        34.0%
        57%
        1.4
        AS1385_4939_172_S47_R1_001
        33.5%
        57%
        1.3
        AS1385_4939_172_S47_R2_001
        33.4%
        57%
        1.3
        AS1386_4939_173_S59_R1_001
        34.7%
        56%
        1.4
        AS1386_4939_173_S59_R2_001
        34.4%
        56%
        1.4
        AS1388_4939_174_S71_R1_001
        34.7%
        57%
        1.3
        AS1388_4939_174_S71_R2_001
        34.6%
        57%
        1.3
        AS1389_4939_175_S83_R1_001
        31.9%
        57%
        1.3
        AS1389_4939_175_S83_R2_001
        32.0%
        57%
        1.3
        AS1391_4939_176_S95_R1_001
        31.0%
        57%
        1.2
        AS1391_4939_176_S95_R2_001
        30.5%
        57%
        1.2
        AS1394_4939_177_S12_R1_001
        45.8%
        32%
        1.1
        AS1394_4939_177_S12_R2_001
        46.2%
        32%
        1.1
        AS1395_4939_178_S24_R1_001
        49.9%
        31%
        1.2
        AS1395_4939_178_S24_R2_001
        49.3%
        32%
        1.2
        AS1400_4939_180_S48_R1_001
        48.5%
        32%
        1.1
        AS1400_4939_180_S48_R2_001
        50.7%
        32%
        1.1
        AS1406_4939_182_S72_R1_001
        42.8%
        32%
        1.3
        AS1406_4939_182_S72_R2_001
        42.7%
        32%
        1.3

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a heatmap row to see a line plot for that dataset.

        rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        384 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

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